There are some options which can effect the overall operation of the program. These options are available from the File\Options menu item.
This option will move the input files after processing them. This can be very helpful when using the scheduler for example. It essentially helps remove redundant processing of files.
Do not enable this option unless you are confident you have backed up all critical data. This option will delete the input files specified after a successful operation has been performed. If both the input and output files are of the same name, no deletion will occur. This can be very helpful when using the scheduler for example. It essentially helps remove redundant processing of files.
You can create a log file for record keeping purposes by filling in a proper path and file name. Doing so also fills in the LOG tab (see bottom of the user interface) with all files processed. Make this entry completely empty to disable the creation of a log.